C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc fingers and homeoboxes 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000297857 ZHX1-201 ENSG00000165156 9606 - 8:123248451-123274487 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000297857
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000297857 3.420±0.00 4.506±0.00 1.485±0.00 1.017±0.50 1.129±0.00 2.215±0.70 4.629±0.00 1.531±0.00 2.532±0.28 1.303±0.41 4.202±2.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002SN CIL_0002SN_0001 CGP 8:123219957-123274487
CIL_000590 CIL_000590_0001 CGP 8:123226189-123275541
CIL_000591 CIL_000591_0001 CGP 8:123248451-123416350

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0030154 IEA cell differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046982 IDA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070143 Zhx1-001 protein_coding Mus_musculus 0 3945
ENSMUST00000110168 Zhx1-201 protein_coding Mus_musculus 0 3890
ENSMUST00000175805 Zhx1-006 protein_coding Mus_musculus 0 3886
ENSMUST00000177276 Zhx1-002 protein_coding Mus_musculus 0 2499
ENSMUST00000176935 9130401M01Rik-001 protein_coding Mus_musculus 4e-38 165
ENSMUST00000176713 Zhx1-005 retained_intron Mus_musculus 4e-38 165
ENSMUST00000176270 Zhx1-007 retained_intron Mus_musculus 4e-38 165

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