C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY-box containing gene 9b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000064500 sox9b-001 ENSDARG00000043923 7955 - 3:63177826-63184481 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000064500
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000064500 3.317±1.52 0.526±0.00 0.327±0.09 0.747±0.00 0.614±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0030318 IMP melanocyte differentiation
GO:0030916 IGI otic vesicle formation
GO:0031016 IMP pancreas development
GO:0035118 IMP embryonic pectoral fin morphogenesis
GO:0043049 IGI otic placode formation
GO:0048839 IMP inner ear development
GO:0050935 IMP iridophore differentiation
GO:0051216 IMP cartilage development
GO:0060041 IMP retina development in camera-type eye
GO:0061008 IMP hepaticobiliary system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301011 ZC3H18-001 protein_coding Homo_sapiens 0.0002 53
ENST00000360880 SOX10-001 protein_coding Homo_sapiens 0 292
ENST00000396884 SOX10-002 protein_coding Homo_sapiens 0 292
ENST00000427770 SOX10-003 protein_coding Homo_sapiens 0 292
ENST00000452588 ZC3H18-002 protein_coding Homo_sapiens 0.0002 53
ENST00000564161 ZC3H18-004 retained_intron Homo_sapiens 0.0002 53

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