C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein 558
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000301475 ZNF558-002 ENSG00000167785 9606 - 19:8809706-8822889 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301475
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301475 1.828±0.00 2.284±0.00 1.425±0.74 2.008±0.25 1.859±0.37 0.743±0.42 1.993±1.01 1.388±0.20 1.236±0.34 0.637±0.44 2.222±1.92 0.870±0.14 2.889±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UU CIL_0000UU_0001 CGP 19:8806170-8843340

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034647 Zfp558-003 protein_coding Mus_musculus 0 1040
ENSMUST00000159596 Zfp558-001 nonsense_mediated_decay Mus_musculus 0 375
ENSMUST00000079642 Zfp119a-001 protein_coding Mus_musculus 1e-30 139
ENSMUST00000165640 Zfp113-201 protein_coding Mus_musculus 2e-24 119
ENSMUST00000049393 Zfp113-001 protein_coding Mus_musculus 2e-24 119
ENSMUST00000109914 Zfp345-001 protein_coding Mus_musculus 0.00000000000002 86
ENSMUST00000109922 Gm14124-001 protein_coding Mus_musculus 0.00000000000002 86
ENSMUST00000109929 Gm14139-201 protein_coding Mus_musculus 0.00000000000007 84
ENSMUST00000109926 Gm14139-001 protein_coding Mus_musculus 0.00000000000007 84
ENSMUST00000054072 Zfp81-001 protein_coding Mus_musculus 0.00000000001 77
ENSMUST00000147630 Zfp97-001 protein_coding Mus_musculus 0.00000000004 75
ENSMUST00000127027 Zfp960-001 protein_coding Mus_musculus 0.0000000005 71
ENSMUST00000060063 Zfp846-201 protein_coding Mus_musculus 0.0000000005 71
ENSMUST00000140668 Zfp846-001 nonsense_mediated_decay Mus_musculus 0.0000000005 71
ENSMUST00000115557 Zfp846-002 protein_coding Mus_musculus 0.0000000005 71
ENSMUST00000080987 Zfp869-201 protein_coding Mus_musculus 0.0000000005 71
ENSMUST00000091481 Zfp72-201 protein_coding Mus_musculus 0.0000000005 71
ENSMUST00000049705 Zfp457-201 protein_coding Mus_musculus 0.00000009 64
ENSMUST00000076281 Zfp781-201 protein_coding Mus_musculus 0.0000003 62
ENSMUST00000105316 Gm3055-201 protein_coding Mus_musculus 0.0000003 62
ENSMUST00000045969 Zfp458-201 protein_coding Mus_musculus 0.000001 60

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