C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein 558
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159596 Zfp558-001 ENSMUSG00000074500 10090 - 9:18455575-18478263 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000159596
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000159596 0.053±0.02 0.030±0.00 0.054±0.01 0.105±0.04 0.023±0.00 0.049±0.02 0.029±0.01 0.059±0.04 0.110±0.04 1.598±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UU CIL_0000UU_0002 CGP 9:18455575-18485292

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000292841 ZNF585A-001 protein_coding Homo_sapiens 0.0000009 62
ENST00000301475 ZNF558-002 protein_coding Homo_sapiens 0 375
ENST00000356958 ZNF585A-201 protein_coding Homo_sapiens 0.0000007 62
ENST00000392157 ZNF585A-004 protein_coding Homo_sapiens 0.0000003 62
ENST00000418100 ZNF724P-001 protein_coding Homo_sapiens 0.00000002 66
ENST00000593450 ZNF209P-001 unprocessed_pseudogene Homo_sapiens 0.0000002 62
ENST00000597304 ZNF558-007 retained_intron Homo_sapiens 0 375
ENST00000601372 ZNF558-001 protein_coding Homo_sapiens 0 375

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