C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pleiotropic regulator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000302078 PLRG1-003 ENSG00000171566 9606 - 4:154536619-154550397 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000302078
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000302078 3.824±0.00 8.713±0.00 2.510±0.00 3.868±1.48 5.081±1.09 4.448±1.19 7.184±0.00 9.781±0.00 5.551±1.06 3.748±0.58 3.162±2.05 10.744±3.35 9.655±0.99 7.651±2.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D1 CIL_0008D1_0001 VISTA 4:154359551-154960904

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003714 TAS transcription corepressor activity
GO:0004871 TAS signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005662 IDA DNA replication factor A complex
GO:0007165 TAS signal transduction
GO:0071013 IDA catalytic step 2 spliceosome
GO:2001141 TAS regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122128 Plrg1-003 protein_coding Mus_musculus 0 1873
ENSMUST00000150268 Plrg1-001 protein_coding Mus_musculus 0 1502
ENSMUST00000029628 Plrg1-002 nonsense_mediated_decay Mus_musculus 0 981
ENSMUST00000151915 Plrg1-004 retained_intron Mus_musculus 0 222

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