C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle amine transport 1-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000302536 VAT1L-001 ENSG00000171724 9606 + 16:77788530-77980107 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000302536
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000302536 0.210±0.00 0.162±0.00 0.488±0.00 9.088±3.17 0.372±0.25 2.298±1.37 4.246±2.76 1.697±1.68 0.409±0.39 0.415±0.00 0.404±0.00 0.278±0.13 1.206±0.86 2.096±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003OI CIL_0003OI_0001 CGP 16:77722492-77980107
CIL_0004YB CIL_0004YB_0002 CGP 16:77788530-78066761

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008270 IEA zinc ion binding
GO:0016491 IEA oxidoreductase activity
GO:0016747 IEA transferase activity, transferring acyl groups other than amino-acyl groups
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049509 Vat1l-001 protein_coding Mus_musculus 0 1840
ENSDART00000126956 vat1l-201 protein_coding Danio_rerio 0 662
ENSMUST00000124143 Vat1l-004 retained_intron Mus_musculus 0 477
ENSMUST00000142591 Vat1l-003 processed_transcript Mus_musculus 0 459
ENSMUST00000150963 Vat1l-002 protein_coding Mus_musculus 0 307

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