C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuronal differentiation 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000302584 NEUROD2-001 ENSG00000171532 9606 - 17:39604780-39607943 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainPlacentaTestisENST00000302584
Transcript ID Brain Placenta Testis
ENST00000302584 8.078±6.64 0.077±0.00 0.122±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0001 VISTA 17:39110111-39710718
CIL_00080Z CIL_00080Z_0001 VISTA 17:39318232-39918735
CIL_00098W CIL_00098W_0001 VISTA 17:39359510-39962707
CIL_0007WH CIL_0007WH_0001 VISTA 17:39374871-39978277
CIL_0007D4 CIL_0007D4_0001 CGP 17:39461511-39609777
CIL_00061T CIL_00061T_0001 CGP 17:39603536-39636626

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001662 IEA behavioral fear response
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003714 ISS transcription corepressor activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0007399 TAS nervous system development
GO:0008306 IEA associative learning
GO:0016567 ISS protein ubiquitination
GO:0021695 ISS cerebellar cortex development
GO:0031915 ISS positive regulation of synaptic plasticity
GO:0045666 ISS positive regulation of neuron differentiation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 ISS protein heterodimerization activity
GO:0046983 IEA protein dimerization activity
GO:0048666 IEA neuron development
GO:0050850 ISS positive regulation of calcium-mediated signaling
GO:0051091 ISS positive regulation of sequence-specific DNA binding transcription factor activity
GO:0070888 ISS E-box binding
GO:0071257 ISS cellular response to electrical stimulus
GO:0071277 ISS cellular response to calcium ion
GO:0090129 ISS positive regulation of synapse maturation
GO:2000297 ISS negative regulation of synapse maturation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041685 Neurod2-001 protein_coding Mus_musculus 0 2196

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