C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007D4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000167258-ENSG00000171532 CGP 9606 17:39461511-39609777
GeneTranscriptPositionBiotype
ENSG00000167258 (CDK12)
cyclin-dependent kinase 12 		ENST00000430627 (CDK12-008) 39461761-39532477 protein_coding
ENST00000447079 (CDK12-001) 39462039-39535146 protein_coding
ENST00000558240 (CDK12-003) 39550191-39564830 processed_transcript
ENST00000559545 (CDK12-004) 39547821-39564907 processed_transcript
ENST00000559663 (CDK12-002) 39525867-39551141 nonsense_mediated_decay
ENST00000581593 (CDK12-011) 39471514-39494692 processed_transcript
ENST00000581963 (CDK12-005) 39543991-39546682 retained_intron
ENST00000584336 (CDK12-007) 39529882-39531844 retained_intron
ENST00000584632 (CDK12-010) 39461511-39526163 protein_coding
ENST00000585161 (CDK12-006) 39548941-39550976 retained_intron
ENSG00000171532 (NEUROD2)
neuronal differentiation 2 		ENST00000302584 (NEUROD2-001) 39604780-39607943 protein_coding
ENST00000580874 (NEUROD2-002) 39603536-39609777 retained_intron
ENSG00000222777 (RNU6-233P)
RNA, U6 small nuclear 233, pseudogene 		ENST00000410845 (RNU6-233P-201) 39546104-39546244 snRNA
ENSG00000223091 (RNU6-981P)
RNA, U6 small nuclear 981, pseudogene 		ENST00000411159 (RNU6-981P-201) 39482486-39482590 snRNA
ENSG00000273576 (RP11-390P24.1)
 ENST00000615852 (RP11-390P24.1-001) 39566915-39567559 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007D4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000003119-ENSMUSG00000038255 CGP 10090 11:98203059-98329648
GeneTranscriptPositionBiotype
ENSMUSG00000003119 (Cdk12)
cyclin-dependent kinase 12 		ENSMUST00000003203 (Cdk12-002) 98203314-98246704 protein_coding
ENSMUST00000107538 (Cdk12-001) 98203335-98251044 protein_coding
ENSMUST00000107539 (Cdk12-005) 98203059-98251564 protein_coding
ENSMUST00000125152 (Cdk12-007) 98263502-98268011 processed_transcript
ENSMUST00000145113 (Cdk12-003) 98220401-98225522 processed_transcript
ENSMUST00000147441 (Cdk12-006) 98241737-98278504 processed_transcript
ENSMUSG00000038255 (Neurod2)
neurogenic differentiation 2 		ENSMUST00000041685 (Neurod2-001) 98325415-98329648 protein_coding
ENSMUSG00000084457 (n-R5s73)
nuclear encoded rRNA 5S 73 		ENSMUST00000122508 (n-R5s73-201) 98273260-98273366 rRNA
ENSMUSG00000093673 (Gm20644)
predicted gene 20644 		ENSMUST00000176721 (Gm20644-001) 98285382-98287444 sense_overlapping

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007D4_0001ENSG00000167258ENST00000430627ENST00000447079ENST00000558240ENST00000559545ENST00000559663ENST00000581593ENST00000581963ENST00000584336ENST00000584632ENST00000585161ENSG00000171532ENST00000302584ENST00000580874ENSG00000222777ENST00000410845ENSG00000223091ENST00000411159ENSG00000273576ENST00000615852CIL_0007D4_0002ENSMUSG00000003119ENSMUST00000003203ENSMUST00000107538ENSMUST00000107539ENSMUST00000125152ENSMUST00000145113ENSMUST00000147441ENSMUSG00000038255ENSMUST00000041685ENSMUSG00000084457ENSMUST00000122508ENSMUSG00000093673ENSMUST00000176721
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007D4_0001ENSG00000167258ENST00000430627ENST00000447079ENST00000584632ENSG00000171532ENST00000302584ENST00000580874ENSG00000222777ENST00000410845ENSG00000223091ENST00000411159ENSG00000273576ENST00000615852CIL_0007D4_0002ENSMUSG00000003119ENSMUST00000003203ENSMUST00000107538ENSMUST00000107539ENSMUST00000147441ENSMUSG00000038255ENSMUST00000041685ENSMUSG00000084457ENSMUST00000122508ENSMUSG00000093673ENSMUST00000176721
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000167258 ENST00000430627 2.804±0.00 1.334±0.00 N/A 1.649±0.00 1.928±0.00 1.923±0.98 1.685±0.00 2.069±0.00 1.145±0.05 1.478±0.27 1.595±0.00 3.500±2.34 2.924±1.07 6.613±3.68
ENST00000447079 1.096±0.00 1.019±0.00 0.914±0.00 0.812±0.32 0.984±0.23 1.857±0.00 0.834±0.46 1.816±0.40 1.306±0.15 2.254±0.08 0.191±0.00 2.540±0.87 1.402±0.46 3.587±0.00
ENST00000558240 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559663 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584632 N/A N/A 2.052±0.00 1.426±0.00 4.679±0.00 3.185±0.00 N/A 3.455±0.00 2.605±0.00 2.515±0.00 N/A 3.821±1.56 N/A N/A
ENST00000585161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000171532 ENST00000302584 N/A N/A N/A 8.078±6.64 N/A N/A N/A N/A N/A N/A N/A N/A 0.077±0.00 0.122±0.00
ENST00000580874 0.011±0.00 0.019±0.00 N/A 0.149±0.00 0.020±0.00 N/A 0.012±0.00 N/A 0.011±0.00 N/A N/A N/A 0.011±0.00 0.021±0.01
ENSG00000222777 ENST00000410845 0.654±0.00 N/A N/A N/A 0.681±0.00 N/A 0.633±0.00 0.411±0.00 N/A N/A N/A 8.407±0.00 N/A 0.526±0.32
ENSG00000223091 ENST00000411159 N/A 0.808±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000273576 ENST00000615852 1.470±0.00 3.909±0.00 0.291±0.00 1.728±0.96 0.898±0.00 1.290±0.01 0.685±0.14 2.236±0.27 1.063±0.00 1.857±0.68 1.492±0.00 4.004±3.38 0.785±0.47 4.023±0.12
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003119 ENSMUST00000003203 N/A N/A N/A 0.551±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.829±0.00 N/A
ENSMUST00000107538 1.207±0.56 1.958±0.85 1.758±0.73 1.523±0.46 1.427±0.43 2.274±0.65 N/A 0.829±0.04 1.429±0.46 1.275±0.26 N/A 2.604±1.05 3.083±1.82 1.841±0.35
ENSMUST00000107539 3.461±0.27 1.871±0.67 1.464±0.09 1.758±0.89 3.695±1.11 1.609±0.60 1.957±0.16 3.033±0.26 2.183±0.72 3.349±0.19 0.554±0.07 3.823±1.18 2.283±1.20 3.233±0.30
ENSMUST00000125152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147441 1.989±0.02 1.779±0.58 4.982±0.37 4.206±0.10 2.780±1.16 2.852±0.75 1.130±0.26 2.116±0.36 2.796±1.35 2.817±0.38 0.916±0.39 2.783±1.58 2.531±0.00 3.962±0.00
ENSMUSG00000038255 ENSMUST00000041685 N/A N/A 0.004±0.00 27.239±10.80 N/A 0.016±0.01 N/A 0.010±0.00 0.013±0.02 0.008±0.00 N/A 0.014±0.00 0.004±0.00 0.009±0.00
ENSMUSG00000084457 ENSMUST00000122508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 34.478±0.00 N/A
ENSMUSG00000093673 ENSMUST00000176721 0.056±0.04 0.067±0.02 0.062±0.00 0.093±0.06 0.035±0.02 0.083±0.00 0.029±0.01 0.027±0.01 0.028±0.01 0.021±0.00 0.026±0.00 0.122±0.08 0.031±0.02 0.107±0.06

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