C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurogenic differentiation 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041685 Neurod2-001 ENSMUSG00000038255 10090 - 11:98325415-98329648 protein_coding

Mus musculus EnsemblGRCm38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000041685
Transcript ID Bladder Brain Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000041685 0.004±0.00 27.239±10.80 0.016±0.01 0.010±0.00 0.013±0.02 0.008±0.00 0.014±0.00 0.004±0.00 0.009±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0002 VISTA 11:97857859-98458466
CIL_00080Z CIL_00080Z_0002 VISTA 11:98039002-98639485
CIL_00098W CIL_00098W_0002 VISTA 11:98077499-98680383
CIL_0007WH CIL_0007WH_0002 VISTA 11:98091902-98695006
CIL_0007D4 CIL_0007D4_0002 CGP 11:98203059-98329648
CIL_00061T CIL_00061T_0002 CGP 11:98325415-98357796

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001662 IMP behavioral fear response
GO:0003677 IDA DNA binding
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008306 IMP associative learning
GO:0016567 IDA protein ubiquitination
GO:0021695 IMP cerebellar cortex development
GO:0031915 IDA positive regulation of synaptic plasticity
GO:0045666 IDA positive regulation of neuron differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IDA protein heterodimerization activity
GO:0048666 IMP neuron development
GO:0050850 IDA positive regulation of calcium-mediated signaling
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0070888 IDA E-box binding
GO:0071257 IDA cellular response to electrical stimulus
GO:0071277 IDA cellular response to calcium ion
GO:0090129 IMP positive regulation of synapse maturation
GO:2000297 IDA negative regulation of synapse maturation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302584 NEUROD2-001 protein_coding Homo_sapiens 0 2196
ENST00000580874 NEUROD2-002 retained_intron Homo_sapiens 0 1831

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