C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: interleukin 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000302987 IL16-003 ENSG00000172349 9606 + 15:81225400-81308798 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLungPlacentaTestisENST00000302987
Transcript ID Adipose Brain Breast Heart Lung Placenta Testis
ENST00000302987 0.985±0.00 0.182±0.00 2.188±0.00 0.428±0.00 2.618±0.00 0.906±0.04 1.230±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CN CIL_0009CN_0001 VISTA 15:80790387-81397930
CIL_00052A CIL_00052A_0002 CGP 15:81159575-81324183

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005125 IEA cytokine activity
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006955 TAS immune response
GO:0016032 IEA viral process
GO:0030595 IEA leukocyte chemotaxis
GO:0050930 IEA induction of positive chemotaxis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001792 Il16-001 protein_coding Mus_musculus 0 3391
ENSMUST00000145610 Il16-003 retained_intron Mus_musculus 0 1615
ENSMUST00000153560 Il16-002 nonsense_mediated_decay Mus_musculus 0 1090
ENSMUST00000151047 Il16-004 retained_intron Mus_musculus 0 850
ENSMUST00000117410 Stard5-002 protein_coding Mus_musculus 0 702

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