C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000305476 SEMA4C-001 ENSG00000168758 9606 - 2:96859716-96869971 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000305476
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000305476 13.869±0.00 11.014±0.00 7.645±6.74 3.439±1.61 9.649±9.35 1.833±1.08 5.277±0.00 5.228±0.00 19.800±0.00 2.261±0.00 17.889±6.89 38.783±19.67 7.354±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UD CIL_0002UD_0001 CGP 2:96836611-96870757
CIL_0002UE CIL_0002UE_0001 CGP 2:96859716-97018438

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 ISS neural tube closure
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0007275 IEA multicellular organismal development
GO:0014069 ISS postsynaptic density
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0021535 ISS cell migration in hindbrain
GO:0021549 IEA cerebellum development
GO:0030054 IEA cell junction
GO:0030672 ISS synaptic vesicle membrane
GO:0032874 IDA positive regulation of stress-activated MAPK cascade
GO:0042692 IDA muscle cell differentiation
GO:0045211 IEA postsynaptic membrane
GO:0071526 ISS semaphorin-plexin signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114991 Sema4c-201 protein_coding Mus_musculus 0 3367

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