C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cold shock domain containing C2, RNA binding
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000306149 CSDC2-001 ENSG00000172346 9606 + 22:41560763-41576666 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306149
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306149 2.025±0.00 1.366±0.00 3.141±2.25 2.954±0.00 27.707±25.95 12.436±0.00 0.207±0.00 5.174±4.73 0.540±0.33 53.804±38.45 2.187±0.00 13.184±0.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000V8 CIL_0000V8_0002 CGP 22:41525804-41577741
CIL_00023C CIL_00023C_0001 CGP 22:41560763-41589890

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 NAS RNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038757 Csdc2-001 protein_coding Mus_musculus 0 782
ENSMUST00000152678 Csdc2-002 retained_intron Mus_musculus 0 374

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