C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000307771 ZRSR2-001 ENSG00000169249 9606 + X:15790472-15823260 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307771
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307771 7.307±0.00 10.047±0.00 0.315±0.00 3.328±2.67 8.421±0.00 6.267±6.07 1.758±1.70 3.537±3.22 0.774±0.61 4.303±3.32 1.534±1.36 5.705±1.25 3.282±0.13 4.674±1.22

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000245 IMP spliceosomal complex assembly
GO:0000398 IMP mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005689 IDA U12-type spliceosomal complex
GO:0008380 IC RNA splicing
GO:0030628 IDA pre-mRNA 3'-splice site binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112289 Zrsr2-001 protein_coding Mus_musculus 0 1142
ENSMUST00000049506 Zrsr1-001 protein_coding Mus_musculus 0 963
ENSMUST00000057843 Commd1-001 protein_coding Mus_musculus 0 243
ENSMUST00000132350 Zrsr2-008 retained_intron Mus_musculus 0 643
ENSMUST00000124719 Zrsr2-006 retained_intron Mus_musculus 0 202

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