C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc fingers and homeoboxes 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000309060 ZHX3-010 ENSG00000174306 9606 - 20:41178448-41300078 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverENST00000309060
Transcript ID Brain Liver
ENST00000309060 2.869±1.15 1.511±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AV CIL_0009AV_0001 VISTA 20:40645674-41248255
CIL_0004EC CIL_0004EC_0001 CGP 20:41028818-41196787
CIL_0002I4 CIL_0002I4_0001 CGP 20:41136960-41317672
CIL_0004E6 CIL_0004E6_0001 CGP 20:41178448-41360582

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003714 IEA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0030154 IEA cell differentiation
GO:0042803 IDA protein homodimerization activity
GO:0045669 IMP positive regulation of osteoblast differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046982 IDA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109460 Zhx3-201 protein_coding Mus_musculus 0 2926
ENSMUST00000103112 Zhx3-001 protein_coding Mus_musculus 0 2926
ENSMUST00000103111 Zhx3-003 protein_coding Mus_musculus 0 2926
ENSMUST00000176141 Zhx3-008 protein_coding Mus_musculus 0 346
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00001 58

Loading