C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ArfGAP with FG repeats 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000189220 Agfg1-001 ENSMUSG00000026159 10090 + 1:82839483-82901182 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000189220
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000189220 2.719±0.78 5.965±3.04 5.651±0.49 6.040±3.18 3.608±0.76 2.861±0.61 1.330±0.14 2.466±0.82 5.965±3.27 6.591±0.66 0.736±0.00 4.149±1.72 3.749±0.74 0.229±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076V CIL_00076V_0002 CGP 1:82756649-82901182

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001675 IMP acrosome assembly
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006810 IEA transport
GO:0007275 IEA multicellular organismal development
GO:0007289 IMP spermatid nucleus differentiation
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0032312 IEA regulation of ARF GTPase activity
GO:0042995 IDA cell projection
GO:0043025 IDA neuronal cell body
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043547 IEA positive regulation of GTPase activity
GO:0045109 IMP intermediate filament organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310078 AGFG1-001 protein_coding Homo_sapiens 0 3903
ENST00000373671 AGFG1-002 protein_coding Homo_sapiens 0 1201
ENST00000409171 AGFG1-005 protein_coding Homo_sapiens 0 2531
ENST00000409315 AGFG1-004 protein_coding Homo_sapiens 0 2113
ENST00000409979 AGFG1-003 protein_coding Homo_sapiens 0 1341
ENST00000456594 AGFG1-006 protein_coding Homo_sapiens 0 1055
ENST00000458212 AGFG1-008 protein_coding Homo_sapiens 0 942
ENST00000486932 AGFG1-007 processed_transcript Homo_sapiens 0 612

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