C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: host cell factor C1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000310441 HCFC1-001 ENSG00000172534 9606 - X:153947553-153971807 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000310441
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000310441 8.678±0.00 3.436±0.00 1.801±0.00 3.915±1.69 2.694±1.21 2.146±0.20 3.103±2.03 2.534±1.59 1.432±0.00 2.713±2.02 4.463±1.27 9.067±8.21 3.658±1.07 5.539±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001LC CIL_0001LC_0001 CGP X:153935263-153971807

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000123 IDA histone acetyltransferase complex
GO:0001205 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003682 IDA chromatin binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0003713 IMP transcription coactivator activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005671 IDA Ada2/Gcn5/Ada3 transcription activator complex
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006325 TAS chromatin organization
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007049 IEA cell cycle
GO:0010628 IDA positive regulation of gene expression
GO:0016020 IDA membrane
GO:0019046 NAS release from viral latency
GO:0042802 IPI identical protein binding
GO:0043025 IDA neuronal cell body
GO:0043254 IDA regulation of protein complex assembly
GO:0043981 IDA histone H4-K5 acetylation
GO:0043982 IDA histone H4-K8 acetylation
GO:0043984 IDA histone H4-K16 acetylation
GO:0043995 IDA histone acetyltransferase activity (H4-K5 specific)
GO:0043996 IDA histone acetyltransferase activity (H4-K8 specific)
GO:0045787 TAS positive regulation of cell cycle
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046972 IDA histone acetyltransferase activity (H4-K16 specific)
GO:0048188 IDA Set1C/COMPASS complex
GO:0050821 IDA protein stabilization
GO:0070461 IDA SAGA-type complex
GO:0070688 IDA MLL5-L complex
GO:0071339 IDA MLL1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033761 Hcfc1-001 protein_coding Mus_musculus 0 4554
ENSMUST00000114372 Hcfc1-005 protein_coding Mus_musculus 0 4543
ENSMUST00000128136 Hcfc1-002 protein_coding Mus_musculus 0 2182
ENSMUST00000131091 Hcfc1-006 processed_transcript Mus_musculus 0 808
ENSMUST00000128325 Hcfc1-008 processed_transcript Mus_musculus 0 573
ENSMUST00000156204 Hcfc1-007 retained_intron Mus_musculus 0 538
ENSDART00000019533 hcfc1b-201 protein_coding Danio_rerio 0 392
ENSDART00000132536 hcfc1b-001 protein_coding Danio_rerio 0 392
ENSDART00000138323 hcfc1b-002 retained_intron Danio_rerio 0 381

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