C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000310599 RP11-209A2.1-001 ENSG00000174572 9606 + 6:27211244-27211913 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungMuscleOvaryTestisENST00000310599
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Muscle Ovary Testis
ENST00000310599 0.131±0.00 0.083±0.00 0.029±0.00 0.066±0.01 0.028±0.00 0.025±0.00 0.054±0.00 0.142±0.00 0.111±0.00 0.096±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096D CIL_00096D_0001 VISTA 6:27032592-27634418

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074085 Rpl10-002 protein_coding Mus_musculus 0 697
ENSMUST00000008826 Rpl10-001 protein_coding Mus_musculus 0 697
ENSMUST00000076364 Rpl10-ps3-201 protein_coding Mus_musculus 0 697
ENSMUST00000119438 Rpl10-ps1-001 transcribed_processed_pseudogene Mus_musculus 0 689
ENSMUST00000121321 Rpl10-ps6-001 processed_pseudogene Mus_musculus 0 682
ENSMUST00000151702 Rpl10-003 protein_coding Mus_musculus 0 651
ENSMUST00000076465 Gm5621-201 processed_pseudogene Mus_musculus 0 640
ENSMUST00000187303 RP23-435I22.2-001 processed_pseudogene Mus_musculus 0 636
ENSMUST00000134330 Rpl10-009 retained_intron Mus_musculus 0 492
ENSMUST00000125775 Rpl10-005 retained_intron Mus_musculus 0 435
ENSMUST00000117855 Gm16128-001 processed_pseudogene Mus_musculus 0 231

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