C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000311111 RPL38-001 ENSG00000172809 9606 + 17:74203653-74210655 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000311111
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000311111 9.705±0.00 59.921±0.00 41.803±0.00 29.783±0.00 26.229±0.00 17.246±0.00 36.029±0.00 32.202±0.00 53.415±0.00 70.484±29.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00073F CIL_00073F_0001 CGP 17:73334384-74210655
CIL_0003AD CIL_0003AD_0002 CGP 17:74203582-74262020

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0001501 IEA skeletal system development
GO:0001503 IEA ossification
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006417 IEA regulation of translation
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0007605 IEA sensory perception of sound
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0033291 IEA eukaryotic 80S initiation complex
GO:0034463 IEA 90S preribosome assembly
GO:0042474 IEA middle ear morphogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0048318 IEA axial mesoderm development

Homologs

No Homologs available.

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