C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00073F_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000069188-ENSG00000172809 CGP 9606 17:73334384-74210655
GeneTranscriptPositionBiotype
ENSG00000069188 (SDK2)
sidekick cell adhesion molecule 2 		ENST00000392650 (SDK2-002) 73334384-73644089 protein_coding
ENST00000410094 (SDK2-006) 73338443-73369213 processed_transcript
ENST00000424778 (SDK2-004) 73337939-73414655 protein_coding
ENST00000479356 (SDK2-001) 73357370-73437769 retained_intron
ENST00000585283 (SDK2-007) 73504340-73507594 processed_transcript
ENSG00000172809 (RPL38)
ribosomal protein L38 		ENST00000311111 (RPL38-001) 74203653-74210655 protein_coding
ENST00000439590 (RPL38-003) 74203582-74209880 protein_coding
ENST00000528433 (RPL38-005) 74203704-74204190 protein_coding
ENST00000529123 (RPL38-004) 74203675-74204593 retained_intron
ENST00000530646 (RPL38-002) 74203662-74206283 retained_intron
ENST00000533498 (RPL38-006) 74203704-74209896 protein_coding
ENST00000534490 (RPL38-007) 74203694-74209461 protein_coding
ENST00000584577 (RPL38-008) 74203693-74209878 protein_coding
ENSG00000234721 (AC125421.1)
 ENST00000455366 (AC125421.1-001) 73786822-73800793 lincRNA
ENST00000584660 (AC125421.1-003) 73786802-73790716 lincRNA
ENSG00000263574 (CTD-2532D12.4)
 ENST00000583854 (CTD-2532D12.4-001) 73737854-73756557 lincRNA
ENSG00000264985 (RP11-449L23.2)
 ENST00000583547 (RP11-449L23.2-001) 73513685-73518770 antisense
ENSG00000265780 (RP11-449L23.3)
 ENST00000583712 (RP11-449L23.3-001) 73519846-73521407 antisense
ENSG00000265927 (CTD-2532D12.5)
 ENST00000580370 (CTD-2532D12.5-001) 73831572-73836019 lincRNA
ENST00000580776 (CTD-2532D12.5-002) 73834767-73835979 lincRNA
ENSG00000265935 (RP11-277J6.3)
 ENST00000584916 (RP11-277J6.3-001) 73662568-73663848 lincRNA
ENSG00000266357 (RP11-101O21.1)
 ENST00000581028 (RP11-101O21.1-001) 74043452-74112899 lincRNA
ENST00000584003 (RP11-101O21.1-002) 74064357-74154212 lincRNA
CIL_00073F_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041592-ENSMUSG00000057322 CGP 10090 11:113776374-114672331
GeneTranscriptPositionBiotype
ENSMUSG00000041592 (Sdk2)
sidekick homolog 2 (chicken) 		ENSMUST00000041627 (Sdk2-001) 113776374-114066218 protein_coding
ENSMUST00000125879 (Sdk2-005) 113806341-113826219 processed_transcript
ENSMUST00000141943 (Sdk2-003) 113848562-114065975 protein_coding
ENSMUST00000144301 (Sdk2-004) 113941423-114067029 processed_transcript
ENSMUST00000155651 (Sdk2-002) 113865600-114067046 processed_transcript
ENSMUST00000156955 (Sdk2-006) 113793839-113810423 processed_transcript
ENSMUSG00000057322 (Rpl38)
ribosomal protein L38 		ENSMUST00000077915 (Rpl38-002) 114668548-114672331 protein_coding
ENSMUST00000082092 (Rpl38-004) 114668626-114672331 protein_coding
ENSMUST00000106599 (Rpl38-003) 114668609-114672331 protein_coding
ENSMUST00000106602 (Rpl38-001) 114668524-114672331 protein_coding
ENSMUSG00000062391 (4932435O22Rik)
RIKEN cDNA 4932435O22 gene 		ENSMUST00000141088 (4932435O22Rik-002) 114413643-114423887 lincRNA
ENSMUST00000148405 (4932435O22Rik-001) 114413401-114448860 lincRNA
ENSMUSG00000075431 (Gm11691)
predicted gene 11691 		ENSMUST00000130963 (Gm11691-001) 114251843-114253127 lincRNA
ENSMUSG00000078600 (1700092K14Rik)
RIKEN cDNA 1700092K14 gene 		ENSMUST00000106604 (1700092K14Rik-001) 114198258-114199199 processed_transcript
ENSMUSG00000081548 (Gm11692)
predicted gene 11692 		ENSMUST00000122121 (Gm11692-001) 114357129-114358261 processed_pseudogene
ENSMUSG00000085844 (Gm11690)
predicted gene 11690 		ENSMUST00000128183 (Gm11690-001) 114219239-114238502 lincRNA
ENSMUSG00000086135 (1700001J04Rik)
RIKEN cDNA 1700001J04 gene 		ENSMUST00000126577 (1700001J04Rik-002) 114185973-114186674 antisense
ENSMUST00000154037 (1700001J04Rik-001) 114185439-114186777 antisense
ENSMUSG00000086760 (1700025D23Rik)
RIKEN cDNA 1700025D23 gene 		ENSMUST00000129365 (1700025D23Rik-001) 114091406-114095336 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00073F_0001ENSG00000069188ENST00000392650ENST00000410094ENST00000424778ENST00000479356ENST00000585283ENSG00000172809ENST00000311111ENST00000439590ENST00000528433ENST00000529123ENST00000530646ENST00000533498ENST00000534490ENST00000584577ENSG00000234721ENST00000455366ENST00000584660ENSG00000263574ENST00000583854ENSG00000264985ENST00000583547ENSG00000265780ENST00000583712ENSG00000265927ENST00000580370ENST00000580776ENSG00000265935ENST00000584916ENSG00000266357ENST00000581028ENST00000584003CIL_00073F_0002ENSMUSG00000041592ENSMUST00000041627ENSMUST00000125879ENSMUST00000141943ENSMUST00000144301ENSMUST00000155651ENSMUST00000156955ENSMUSG00000057322ENSMUST00000077915ENSMUST00000082092ENSMUST00000106599ENSMUST00000106602ENSMUSG00000062391ENSMUST00000141088ENSMUST00000148405ENSMUSG00000075431ENSMUST00000130963ENSMUSG00000078600ENSMUST00000106604ENSMUSG00000081548ENSMUST00000122121ENSMUSG00000085844ENSMUST00000128183ENSMUSG00000086135ENSMUST00000126577ENSMUST00000154037ENSMUSG00000086760ENSMUST00000129365
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00073F_0001ENSG00000069188ENST00000392650ENST00000410094ENST00000424778ENST00000479356ENST00000585283ENSG00000172809ENST00000311111ENST00000439590ENST00000528433ENST00000533498ENST00000584577ENSG00000234721ENST00000455366ENST00000584660ENSG00000263574ENST00000583854ENSG00000264985ENST00000583547ENSG00000265780ENST00000583712ENSG00000265927ENST00000580370ENST00000580776ENSG00000265935ENST00000584916ENSG00000266357ENST00000581028CIL_00073F_0002ENSMUSG00000041592ENSMUST00000041627ENSMUST00000125879ENSMUST00000141943ENSMUST00000144301ENSMUST00000155651ENSMUST00000156955ENSMUSG00000057322ENSMUST00000077915ENSMUST00000082092ENSMUST00000106602ENSMUSG00000062391ENSMUST00000141088ENSMUST00000148405ENSMUSG00000075431ENSMUST00000130963ENSMUSG00000078600ENSMUST00000106604ENSMUSG00000081548ENSMUST00000122121ENSMUSG00000085844ENSMUST00000128183ENSMUSG00000086135ENSMUST00000126577ENSMUST00000154037ENSMUSG00000086760ENSMUST00000129365
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000069188 ENST00000392650 N/A 0.094±0.00 0.042±0.00 0.271±0.12 N/A N/A N/A N/A 0.046±0.00 N/A N/A N/A N/A 1.039±0.31
ENST00000410094 N/A N/A N/A N/A 0.283±0.00 N/A N/A N/A 0.142±0.00 N/A N/A 0.330±0.00 0.411±0.00 N/A
ENST00000424778 0.051±0.00 N/A N/A N/A N/A 0.254±0.00 0.187±0.00 N/A N/A 0.194±0.13 N/A 0.241±0.06 0.542±0.00 10.741±0.12
ENST00000479356 N/A N/A N/A N/A N/A N/A 0.068±0.00 N/A N/A 0.074±0.00 N/A N/A 0.220±0.00 8.280±0.00
ENST00000585283 N/A N/A N/A N/A N/A N/A N/A N/A 0.443±0.00 N/A N/A N/A N/A N/A
ENSG00000172809 ENST00000311111 N/A N/A 9.705±0.00 59.921±0.00 41.803±0.00 29.783±0.00 26.229±0.00 17.246±0.00 36.029±0.00 32.202±0.00 53.415±0.00 70.484±29.56 N/A N/A
ENST00000439590 274.950±0.00 378.217±0.00 16.800±0.00 109.950±0.00 237.389±0.00 218.587±167.96 231.512±0.00 77.528±18.84 106.766±58.16 434.282±0.00 597.231±0.00 730.898±432.34 551.567±258.42 242.958±88.69
ENST00000528433 N/A N/A N/A 280.375±0.00 N/A 374.960±0.00 N/A N/A N/A N/A N/A N/A N/A 429.224±0.00
ENST00000529123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533498 N/A N/A N/A 53.444±0.00 N/A N/A N/A 30.052±0.00 N/A N/A N/A N/A N/A N/A
ENST00000534490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584577 155.375±0.00 179.934±0.00 40.972±0.00 204.650±0.00 118.465±3.37 107.342±5.95 99.922±17.75 84.643±19.22 134.614±28.28 400.175±226.87 397.520±224.20 171.052±89.59 173.094±90.48 64.604±23.45
ENSG00000234721 ENST00000455366 0.006±0.00 N/A N/A 0.007±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.056±0.03
ENST00000584660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.00
ENSG00000263574 ENST00000583854 N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000264985 ENST00000583547 N/A N/A N/A 0.091±0.02 N/A 0.017±0.00 N/A N/A N/A 0.117±0.00 N/A 0.024±0.00 N/A 0.021±0.00
ENSG00000265780 ENST00000583712 0.023±0.00 0.092±0.00 N/A 0.100±0.04 0.048±0.00 0.054±0.00 0.077±0.00 0.012±0.00 0.010±0.00 0.021±0.00 0.061±0.00 0.052±0.00 N/A 0.173±0.00
ENSG00000265927 ENST00000580370 0.034±0.00 N/A N/A 0.041±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.066±0.00
ENST00000580776 N/A N/A N/A N/A N/A N/A N/A 0.241±0.00 N/A N/A N/A N/A N/A 0.308±0.00
ENSG00000265935 ENST00000584916 N/A N/A N/A N/A N/A N/A N/A 0.140±0.00 N/A N/A N/A N/A N/A 0.284±0.06
ENSG00000266357 ENST00000581028 N/A N/A N/A N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A 1.817±0.24
ENST00000584003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000041592 ENSMUST00000041627 0.374±0.05 0.149±0.06 N/A 1.888±1.26 0.129±0.08 0.259±0.10 0.103±0.04 0.076±0.02 0.045±0.03 0.165±0.05 0.033±0.01 0.250±0.15 1.489±1.60 1.010±0.74
ENSMUST00000125879 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.239±0.00 4.606±0.00
ENSMUST00000141943 N/A N/A N/A N/A N/A N/A 0.098±0.00 N/A N/A N/A N/A 0.333±0.00 N/A N/A
ENSMUST00000144301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.405±0.00 N/A N/A
ENSMUST00000155651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.189±0.00 N/A N/A
ENSMUST00000156955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.144±0.00 N/A N/A N/A
ENSMUSG00000057322 ENSMUST00000077915 63.728±21.53 11.736±3.85 117.968±1.52 221.519±163.26 48.154±8.25 53.302±12.02 53.318±9.39 94.200±25.65 73.771±73.38 74.181±4.72 47.411±4.84 47.095±23.69 99.364±34.94 70.862±24.80
ENSMUST00000082092 N/A 2.315±0.00 N/A N/A 51.954±0.00 N/A N/A N/A 250.931±50.55 N/A N/A 1860.045±155.23 652.257±267.51 35.492±0.00
ENSMUST00000106599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000106602 99.119±22.39 15.771±2.32 N/A 200.311±52.06 59.041±20.70 90.893±16.80 74.625±11.42 141.953±40.92 167.715±137.89 94.570±6.16 214.929±24.63 78.771±85.09 261.396±125.00 141.457±36.19
ENSMUSG00000062391 ENSMUST00000141088 0.065±0.01 N/A 0.049±0.00 0.025±0.00 0.052±0.03 0.039±0.00 0.125±0.02 0.030±0.01 0.005±0.00 0.034±0.02 0.029±0.01 0.076±0.03 0.002±0.00 1.000±0.48
ENSMUST00000148405 0.047±0.00 N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A N/A 0.047±0.01 0.047±0.02 N/A N/A
ENSMUSG00000075431 ENSMUST00000130963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.044±0.05
ENSMUSG00000078600 ENSMUST00000106604 0.157±0.00 N/A N/A 0.129±0.00 N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A 1.359±0.53
ENSMUSG00000081548 ENSMUST00000122121 N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A 0.043±0.00 N/A 0.123±0.00
ENSMUSG00000085844 ENSMUST00000128183 0.037±0.00 0.057±0.00 0.009±0.00 N/A 0.760±0.35 0.068±0.03 0.034±0.01 0.025±0.01 0.113±0.00 0.180±0.04 N/A 0.024±0.01 0.013±0.01 0.113±0.00
ENSMUSG00000086135 ENSMUST00000126577 N/A N/A 0.022±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.524±1.03
ENSMUST00000154037 N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.815±0.13
ENSMUSG00000086760 ENSMUST00000129365 N/A N/A N/A 0.010±0.00 N/A N/A 0.034±0.00 N/A N/A N/A 0.093±0.02 0.048±0.00 0.010±0.00 15.136±7.12

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