C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lipoprotein lipase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000311322 LPL-001 ENSG00000175445 9606 + 8:19938971-19967258 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverLungOvaryPlacentaTestisENST00000311322
Transcript ID Brain Heart Liver Lung Ovary Placenta Testis
ENST00000311322 0.694±0.00 60.754±20.54 23.180±0.00 22.265±0.00 0.941±0.00 4.000±0.00 0.091±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TK CIL_0003TK_0001 CGP 8:19817140-19967258
CIL_0003TS CIL_0003TS_0001 CGP 8:19901717-20183206

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0004465 ISS:IEA lipoprotein lipase activity
GO:0004620 ISS phospholipase activity
GO:0004806 ISS triglyceride lipase activity
GO:0005102 IPI receptor binding
GO:0005515 IPI:IEA protein binding
GO:0005576 TAS extracellular region
GO:0005615 IDA extracellular space
GO:0005886 IEA plasma membrane
GO:0006629 IEA lipid metabolic process
GO:0006633 ISS fatty acid biosynthetic process
GO:0006641 ISS triglyceride metabolic process
GO:0006644 ISS phospholipid metabolic process
GO:0007603 TAS phototransduction, visible light
GO:0008201 IDA heparin binding
GO:0009409 IEA response to cold
GO:0009986 IEA cell surface
GO:0010744 IC positive regulation of macrophage derived foam cell differentiation
GO:0010886 IMP positive regulation of cholesterol storage
GO:0010890 IMP positive regulation of sequestering of triglyceride
GO:0016042 IEA lipid catabolic process
GO:0017129 IEA triglyceride binding
GO:0019432 IEA triglyceride biosynthetic process
GO:0019433 ISS triglyceride catabolic process
GO:0031012 IEA extracellular matrix
GO:0031225 IEA anchored component of membrane
GO:0034185 IPI apolipoprotein binding
GO:0034361 IEA very-low-density lipoprotein particle
GO:0034371 IC chylomicron remodeling
GO:0034372 ISS very-low-density lipoprotein particle remodeling
GO:0042157 TAS lipoprotein metabolic process
GO:0042493 IEA response to drug
GO:0042627 IEA chylomicron
GO:0044281 TAS small molecule metabolic process
GO:0052689 IEA carboxylic ester hydrolase activity
GO:0070062 IDA extracellular vesicular exosome
GO:0070328 IGI triglyceride homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000015712 Lpl-001 protein_coding Mus_musculus 0 1860
ENSMUST00000168401 Lpl-002 nonsense_mediated_decay Mus_musculus 0 1733
ENSMUST00000169749 Lpl-004 processed_transcript Mus_musculus 0 588
ENSMUST00000101463 Lpl-003 retained_intron Mus_musculus 0 279

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