C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomyosin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000312970 TPM3-022 ENSG00000143549 9606 - 1:154157526-154183078 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000312970
Transcript ID Adipose Bladder Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000312970 60.023±0.00 12.072±0.00 47.032±0.00 24.766±0.00 12.997±0.00 21.826±0.00 22.307±0.00 102.184±68.45 114.621±0.00 39.960±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000062193 Tpm3-201 protein_coding Mus_musculus 0 926
ENSMUST00000029549 Tpm3-003 protein_coding Mus_musculus 0 926
ENSMUST00000119570 Tpm3-001 protein_coding Mus_musculus 0 926
ENSMUST00000072359 Tpm3-rs7-201 protein_coding Mus_musculus 0 920
ENSMUST00000119158 Tpm3-005 protein_coding Mus_musculus 0 547
ENSMUST00000118566 Tpm3-004 protein_coding Mus_musculus 0 547
ENSMUST00000121503 Tpm3-002 protein_coding Mus_musculus 0 547
ENSMUST00000133281 Tpm3-010 retained_intron Mus_musculus 0 418
ENSMUST00000133361 Tpm3-013 retained_intron Mus_musculus 0 412
ENSMUST00000149432 Tpm3-007 protein_coding Mus_musculus 0 364
ENSMUST00000131354 Tpm3-006 retained_intron Mus_musculus 0 364
ENSMUST00000147430 Tpm3-011 retained_intron Mus_musculus 0 364
ENSMUST00000151798 Tpm3-012 retained_intron Mus_musculus 0 287
ENSMUST00000149734 Tpm3-014 retained_intron Mus_musculus 0 279
ENSMUST00000143281 Tpm3-015 retained_intron Mus_musculus 0 211
ENSMUST00000149115 Tpm3-009 retained_intron Mus_musculus 0 209
ENSMUST00000127955 Tpm3-008 protein_coding Mus_musculus 1e-25 121

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