C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000318074 SYTL1-001 ENSG00000142765 9606 + 1:27342022-27353932 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastKidneyLungENST00000318074
Transcript ID Adipose Breast Kidney Lung
ENST00000318074 0.148±0.00 1.316±0.45 0.920±0.00 2.670±1.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WN CIL_0008WN_0001 VISTA 1:27203963-27805666

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005886 IDA plasma membrane
GO:0006886 IEA intracellular protein transport
GO:0006887 IEA:IDA exocytosis
GO:0017137 IEA Rab GTPase binding
GO:0019897 ISS extrinsic component of plasma membrane
GO:0042043 ISS neurexin family protein binding
GO:0042470 ISS melanosome
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030674 Sytl1-001 protein_coding Mus_musculus 0 1166
ENSMUST00000105908 Sytl1-004 protein_coding Mus_musculus 0 846
ENSMUST00000142039 Sytl1-002 processed_transcript Mus_musculus 0 728
ENSMUST00000154911 Sytl1-003 processed_transcript Mus_musculus 0 309

Loading