C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin ID
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000318217 MYO1D-001 ENSG00000176658 9606 - 17:32492522-32877177 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000318217
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000318217 26.326±0.00 7.600±0.00 1.317±0.00 3.128±1.80 4.342±0.26 9.440±1.75 1.804±0.00 5.561±4.33 1.606±0.18 5.916±3.98 1.278±1.19 7.449±3.71 6.502±2.55 8.946±7.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RL CIL_0005RL_0002 CGP 17:32486619-32877177
CIL_0005K8 CIL_0005K8_0001 CGP 17:32492522-32945106

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000146 IEA microfilament motor activity
GO:0003774 IEA motor activity
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005524 IEA ATP binding
GO:0005768 ISS endosome
GO:0005790 IEA smooth endoplasmic reticulum
GO:0006200 IEA ATP catabolic process
GO:0008152 IEA metabolic process
GO:0010923 IDA negative regulation of phosphatase activity
GO:0016459 IEA myosin complex
GO:0030673 IEA axolemma
GO:0030898 IEA actin-dependent ATPase activity
GO:0048306 IEA calcium-dependent protein binding
GO:0061502 ISS early endosome to recycling endosome transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041065 Myo1d-001 protein_coding Mus_musculus 0 4004
ENSMUST00000070997 Myo1d-002 protein_coding Mus_musculus 0 3500
ENSMUST00000125944 Myo1d-003 retained_intron Mus_musculus 0 1672
ENSDART00000067762 MYO1D-001 protein_coding Danio_rerio 0 1129

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