C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mesenchyme homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057054 Meox1-001 ENSMUSG00000001493 10090 - 11:101877510-101894374 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057054
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057054 1.005±0.40 0.583±0.27 0.746±0.02 0.248±0.24 2.728±1.17 0.924±0.31 3.810±0.68 1.804±0.22 0.095±0.13 2.391±0.37 0.850±0.36 1.430±1.05 0.115±0.10 0.106±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000996 CIL_000996_0002 VISTA 11:101501412-102102123
CIL_00090X CIL_00090X_0002 VISTA 11:101529827-102131014
CIL_000997 CIL_000997_0002 VISTA 11:101567301-102168287
CIL_00048L CIL_00048L_0002 CGP 11:101769742-101894374
CIL_00059O CIL_00059O_0002 CGP 11:101877510-101967015

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001046 IDA core promoter sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001757 IGI somite specification
GO:0003682 IDA chromatin binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0043565 IMP sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060218 ISS hematopoietic stem cell differentiation
GO:0061053 IMP somite development
GO:0061056 IMP sclerotome development
GO:0071837 IPI HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000239144 HOXB8-001 protein_coding Homo_sapiens 0.00000000009 73
ENST00000306324 HOXD4-001 protein_coding Homo_sapiens 0.000000003 68
ENST00000318579 MEOX1-001 protein_coding Homo_sapiens 0 780
ENST00000329168 MEOX1-201 protein_coding Homo_sapiens 0 377
ENST00000393661 MEOX1-003 protein_coding Homo_sapiens 0 593
ENST00000468418 HOXD3-001 nonsense_mediated_decay Homo_sapiens 0.000000008 68
ENST00000498634 HOXB8-003 protein_coding Homo_sapiens 0.00000000002 73
ENST00000549132 MEOX1-002 protein_coding Homo_sapiens 0 377
ENST00000576562 HOXB8-002 protein_coding Homo_sapiens 0.00000000004 73

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