C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: t-complex 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000321394 TCP1-001 ENSG00000120438 9606 - 6:159778498-159789749 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverOvaryPlacentaTestisENST00000321394
Transcript ID Bladder Brain Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000321394 11.028±0.00 52.156±10.76 25.177±0.00 16.837±0.00 39.826±0.00 52.775±0.00 96.708±48.30 27.202±8.01 66.046±8.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089P CIL_00089P_0001 VISTA 6:159654795-160257694

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000242 IEA pericentriolar material
GO:0000792 IEA heterochromatin
GO:0001669 IEA acrosomal vesicle
GO:0002199 IEA zona pellucida receptor complex
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005720 IEA nuclear heterochromatin
GO:0005794 IEA Golgi apparatus
GO:0005813 IDA centrosome
GO:0005815 IEA microtubule organizing center
GO:0005829 TAS cytosol
GO:0005832 IEA chaperonin-containing T-complex
GO:0005874 IDA microtubule
GO:0006457 IEA:TAS protein folding
GO:0007021 NAS tubulin complex assembly
GO:0007339 IEA binding of sperm to zona pellucida
GO:0044053 IEA translocation of peptides or proteins into host cell cytoplasm
GO:0044267 IEA:TAS cellular protein metabolic process
GO:0044297 IEA cell body
GO:0044822 IDA poly(A) RNA binding
GO:0051082 IEA unfolded protein binding
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0070062 IDA extracellular vesicular exosome
GO:1901998 IEA toxin transport
GO:2000109 IEA regulation of macrophage apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000151287 Tcp1-001 protein_coding Mus_musculus 0 2255
ENSMUST00000089024 Tcp1-003 protein_coding Mus_musculus 0 2039
ENSMUST00000129632 Tcp1-002 retained_intron Mus_musculus 0 1714
ENSMUST00000120941 Tcp1-ps1-001 processed_pseudogene Mus_musculus 0 1345
ENSMUST00000138709 Tcp1-010 retained_intron Mus_musculus 0 815
ENSDART00000126038 tcp1-201 protein_coding Danio_rerio 0 736
ENSMUST00000133003 Tcp1-007 retained_intron Mus_musculus 0 686
ENSMUST00000151715 Tcp1-006 retained_intron Mus_musculus 0 545
ENSMUST00000143961 Tcp1-004 protein_coding Mus_musculus 0 425
ENSMUST00000043923 Acat3-001 protein_coding Mus_musculus 0 298
ENSMUST00000147724 Tcp1-005 processed_transcript Mus_musculus 0 250
ENSMUST00000159697 Acat2-002 protein_coding Mus_musculus 1.96182e-44 185
ENSMUST00000007005 Acat2-001 protein_coding Mus_musculus 1.96182e-44 185
ENSMUST00000137289 Tcp1-009 retained_intron Mus_musculus 0 407

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