C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: structural maintenance of chromosomes 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000322213 SMC1A-001 ENSG00000072501 9606 - X:53374149-53422728 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000322213
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000322213 5.427±0.00 8.985±0.00 2.051±0.00 4.038±0.00 3.700±1.74 2.321±2.05 7.011±0.00 1.409±0.64 3.365±0.94 3.609±2.40 6.490±3.51 4.879±0.90 5.154±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000070 TAS mitotic sister chromatid segregation
GO:0000278 TAS mitotic cell cycle
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0000775 TAS chromosome, centromeric region
GO:0000776 IDA kinetochore
GO:0000794 TAS condensed nuclear chromosome
GO:0003682 IDA chromatin binding
GO:0003777 NAS microtubule motor activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005694 TAS:IEA chromosome
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006281 TAS DNA repair
GO:0007052 TAS mitotic spindle organization
GO:0007062 IMP sister chromatid cohesion
GO:0007064 TAS mitotic sister chromatid cohesion
GO:0007093 IDA mitotic cell cycle checkpoint
GO:0007126 ISS meiotic nuclear division
GO:0008280 TAS cohesin core heterodimer
GO:0008380 TAS RNA splicing
GO:0009314 IEP response to radiation
GO:0010467 TAS gene expression
GO:0019827 IEA stem cell maintenance
GO:0030893 IDA meiotic cohesin complex
GO:0032876 IMP negative regulation of DNA endoreduplication
GO:0036033 IEA mediator complex binding
GO:0042770 IDA signal transduction in response to DNA damage
GO:0044822 IDA poly(A) RNA binding
GO:0046982 IPI protein heterodimerization activity
GO:0051276 IEA chromosome organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045312 Smc1a-001 protein_coding Mus_musculus 0 5350
ENSDART00000081016 smc1al-001 protein_coding Danio_rerio 0 2447
ENSMUST00000145518 Smc1a-002 nonsense_mediated_decay Mus_musculus 0 2206
ENSMUST00000124681 Smc1a-006 retained_intron Mus_musculus 0 468
ENSMUST00000141457 Smc1a-005 retained_intron Mus_musculus 0 459
ENSMUST00000135172 Smc1a-003 retained_intron Mus_musculus 0 364
ENSMUST00000131395 Smc1a-004 retained_intron Mus_musculus 0 335

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