C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SUZ12 polycomb repressive complex 2 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000322652 SUZ12-001 ENSG00000178691 9606 + 17:31937018-32001045 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000322652
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000322652 3.239±0.00 2.222±0.00 1.235±0.00 2.440±0.71 2.962±0.00 4.196±0.00 1.668±0.96 3.693±0.93 1.866±0.07 5.248±0.00 1.882±0.00 3.720±0.94 2.836±0.53 6.683±2.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000VR CIL_0000VR_0001 CGP 17:31860899-32001045

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001739 IEA sex chromatin
GO:0003682 IEA chromatin binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008284 IEA positive regulation of cell proliferation
GO:0016571 IEA histone methylation
GO:0016574 IEA histone ubiquitination
GO:0035064 IDA methylated histone binding
GO:0035098 IMP ESC/E(Z) complex
GO:0042054 IMP histone methyltransferase activity
GO:0043565 IEA sequence-specific DNA binding
GO:0045596 IMP negative regulation of cell differentiation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017692 Suz12-001 protein_coding Mus_musculus 0 3611
ENSMUST00000163272 Suz12-201 protein_coding Mus_musculus 0 2560
ENSMUST00000120719 Gm14752-001 processed_pseudogene Mus_musculus 0 1110
ENSMUST00000148140 Suz12-004 retained_intron Mus_musculus 0 872
ENSMUST00000144188 Suz12-003 nonsense_mediated_decay Mus_musculus 0 673
ENSMUST00000126091 Suz12-002 nonsense_mediated_decay Mus_musculus 0 560
ENSMUST00000132312 Suz12-005 retained_intron Mus_musculus 0 300

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