C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thymidylate synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000323224 TYMS-002 ENSG00000176890 9606 + 18:657743-673484 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartENST00000323224
Transcript ID Heart
ENST00000323224 3.088±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 TAS G1/S transition of mitotic cell cycle
GO:0000083 TAS regulation of transcription involved in G1/S transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0004799 TAS:IEA thymidylate synthase activity
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0005759 IDA mitochondrial matrix
GO:0005829 TAS cytosol
GO:0006139 TAS nucleobase-containing compound metabolic process
GO:0006206 TAS pyrimidine nucleobase metabolic process
GO:0006231 IEA dTMP biosynthetic process
GO:0006235 IEA dTTP biosynthetic process
GO:0009157 TAS deoxyribonucleoside monophosphate biosynthetic process
GO:0032259 IEA methylation
GO:0044281 TAS small molecule metabolic process
GO:0046134 TAS pyrimidine nucleoside biosynthetic process
GO:0046683 IEP response to organophosphorus
GO:0055086 TAS nucleobase-containing small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026846 Tyms-001 protein_coding Mus_musculus 0 492
ENSMUST00000134298 Tyms-006 retained_intron Mus_musculus 0 451
ENSMUST00000141630 Tyms-002 nonsense_mediated_decay Mus_musculus 0 451
ENSMUST00000138520 Tyms-005 processed_transcript Mus_musculus 0 448
ENSMUST00000146520 Tyms-004 processed_transcript Mus_musculus 0 375
ENSMUST00000154751 Tyms-003 retained_intron Mus_musculus 0 243

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