C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000070345 Usp39-001 ENSMUSG00000056305 10090 - 6:72318678-72345184 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070345
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070345 9.051±1.63 7.706±2.48 8.998±0.06 10.879±6.10 10.886±3.43 6.372±0.70 5.788±0.26 7.485±1.80 15.066±11.13 10.736±1.79 7.207±1.66 12.565±3.04 24.523±3.37 10.818±5.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WR CIL_0007WR_0002 VISTA 6:71915186-72518828
CIL_00084P CIL_00084P_0002 VISTA 6:71915200-72518764
CIL_0003NX CIL_0003NX_0002 CGP 6:72318678-72353158

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007049 IEA cell cycle
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0051301 IEA cell division

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323701 USP39-009 protein_coding Homo_sapiens 0 2246
ENST00000409025 USP39-003 protein_coding Homo_sapiens 0 1977
ENST00000409470 USP39-001 protein_coding Homo_sapiens 0 2193
ENST00000409766 USP39-010 protein_coding Homo_sapiens 0 1775
ENST00000442708 USP39-015 protein_coding Homo_sapiens 0 326
ENST00000448971 USP39-014 protein_coding Homo_sapiens 0 488
ENST00000450066 USP39-201 protein_coding Homo_sapiens 0 1779
ENST00000455732 USP39-018 processed_transcript Homo_sapiens 0 514
ENST00000458268 USP39-019 nonsense_mediated_decay Homo_sapiens 0 767
ENST00000459775 USP39-012 processed_transcript Homo_sapiens 0 1901
ENST00000465282 USP39-013 processed_transcript Homo_sapiens 0 315
ENST00000465514 USP39-022 processed_transcript Homo_sapiens 0 270
ENST00000467885 USP39-007 nonsense_mediated_decay Homo_sapiens 0 235
ENST00000490193 USP39-023 processed_transcript Homo_sapiens 2e-34 150
ENST00000491659 USP39-021 processed_transcript Homo_sapiens 0 311
ENST00000493829 USP39-006 retained_intron Homo_sapiens 0 1890
ENST00000613444 USP39-202 protein_coding Homo_sapiens 0 1993

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