C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: musculin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000325509 MSC-001 ENSG00000178860 9606 - 8:71841549-71844468 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325509
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325509 9.146±0.00 20.313±0.00 2.858±1.97 10.484±8.39 2.892±0.00 1.839±0.60 3.011±0.00 0.331±0.00 8.971±0.00 0.661±0.19 10.741±6.67 15.582±3.81 10.240±6.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003F4 CIL_0003F4_0001 CGP 8:71197433-71844468
CIL_0003FQ CIL_0003FQ_0001 CGP 8:71841549-72075617

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001206 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003714 TAS transcription corepressor activity
GO:0005634 IEA nucleus
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0014707 IEA branchiomeric skeletal muscle development
GO:0046983 IEA protein dimerization activity
GO:0060021 IEA palate development
GO:0060539 IEA diaphragm development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027062 Msc-001 protein_coding Mus_musculus 0 601
ENSMUST00000190471 Msc-002 retained_intron Mus_musculus 0 508

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