C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium binding protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000325656 CABP4-001 ENSG00000175544 9606 + 11:67455347-67460313 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverOvaryPlacentaENST00000325656
Transcript ID Adrenal Brain Breast Colon Heart Liver Ovary Placenta
ENST00000325656 7.096±0.00 0.188±0.18 0.098±0.06 0.080±0.00 0.019±0.00 0.153±0.14 0.169±0.00 0.193±0.04

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 TAS:IEA calcium ion binding
GO:0005576 NAS extracellular region
GO:0005829 IDA cytosol
GO:0007165 NAS signal transduction
GO:0007601 IMP visual perception
GO:0007602 IEA phototransduction
GO:0008594 IEA photoreceptor cell morphogenesis
GO:0043195 TAS terminal bouton
GO:0045202 TAS synapse
GO:0046549 IEA retinal cone cell development
GO:0060040 IEA retinal bipolar neuron differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000151775 Cabp1-005 processed_transcript Mus_musculus 4e-30 137
ENSMUST00000145197 Cabp1-002 nonsense_mediated_decay Mus_musculus 4e-30 137
ENSMUST00000112112 Cabp1-003 protein_coding Mus_musculus 4e-30 137
ENSMUST00000112109 Cabp1-006 protein_coding Mus_musculus 4e-30 137
ENSMUST00000112113 Cabp1-004 protein_coding Mus_musculus 4e-30 137
ENSMUST00000031519 Cabp1-001 protein_coding Mus_musculus 4e-30 137
ENSDART00000018528 cabp5a-201 protein_coding Danio_rerio 0.00000000000006 84
ENSDART00000144067 cabp5a-001 protein_coding Danio_rerio 0.00000000000006 84

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