Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	retinoblastoma binding protein 8
ENST00000327155	RBBP8-001	ENSG00000101773	9606	+	18:22933315-23026486	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Ovary	Placenta	Testis
ENST00000327155	0.806±0.00	0.877±0.00	1.680±0.00	0.709±0.00	1.699±0.60	1.942±0.02	0.468±0.12	5.576±0.00	0.863±0.00	2.740±1.55	2.191±0.50	1.597±0.29	2.932±0.51

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0005NS	CIL_0005NS_0001	CGP	18:22798261-23260467

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0000014	IMP	single-stranded DNA endodeoxyribonuclease activity
GO:0000075	TAS	cell cycle checkpoint
GO:0000122	IDA	negative regulation of transcription from RNA polymerase II promoter
GO:0000724	IDA	double-strand break repair via homologous recombination
GO:0000737	IMP	DNA catabolic process, endonucleolytic
GO:0001103	IPI	RNA polymerase II repressing transcription factor binding
GO:0001106	IDA	RNA polymerase II transcription corepressor activity
GO:0003684	IDA	damaged DNA binding
GO:0005515	IPI	protein binding
GO:0005634	IDA	nucleus
GO:0005730	IDA	nucleolus
GO:0006281	TAS	DNA repair
GO:0006357	TAS	regulation of transcription from RNA polymerase II promoter
GO:0007067	IEA	mitotic nuclear division
GO:0010792	IMP	DNA double-strand break processing involved in repair via single-strand annealing
GO:0017053	IDA	transcriptional repressor complex
GO:0031572	IDA	G2 DNA damage checkpoint
GO:0051321	IEA	meiotic cell cycle

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENSMUST00000115861	Rbbp8-202	protein_coding	Mus_musculus	0	2645
ENSMUST00000047322	Rbbp8-201	protein_coding	Mus_musculus	0	2645

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