C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox B2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000330070 HOXB2-001 ENSG00000173917 9606 - 17:48542655-48544989 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000330070
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000330070 11.883±0.00 5.562±0.00 9.630±0.00 17.931±0.00 1.526±0.00 26.291±0.00 1.126±0.00 11.102±0.00 2.406±0.00 5.407±1.51 3.286±0.35 9.446±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0001 VISTA 17:48304888-48905406

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002011 IEA morphogenesis of an epithelial sheet
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 TAS multicellular organismal development
GO:0008015 TAS blood circulation
GO:0009952 IEA anterior/posterior pattern specification
GO:0009953 IEA dorsal/ventral pattern formation
GO:0021569 IEA rhombomere 3 development
GO:0021570 IEA rhombomere 4 development
GO:0021612 IEA facial nerve structural organization
GO:0043565 IEA sequence-specific DNA binding
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048705 IEA skeletal system morphogenesis
GO:0048857 IEA neural nucleus development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100523 Hoxb2-001 protein_coding Mus_musculus 0 1149
ENSMUST00000182030 Hoxb2-002 retained_intron Mus_musculus 0 654
ENSDART00000146636 hoxb2a-001 protein_coding Danio_rerio 6.00036e-42 176
ENSMUST00000101395 Hoxa4-001 protein_coding Mus_musculus 0.000000000006 77

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