C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000101395 Hoxa4-001 ENSMUSG00000000942 10090 - 6:52189671-52191753 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverLungMusclePlacentaTestisENSMUST00000101395
Transcript ID Brain Breast Heart Liver Lung Muscle Placenta Testis
ENSMUST00000101395 4.624±3.86 1.949±0.00 0.456±0.04 0.284±0.16 3.255±0.60 2.774±0.37 0.504±0.12 19.848±8.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529
CIL_0003PB CIL_0003PB_0002 CGP 6:52189671-52204587

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 TAS DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IDA multicellular organismal development
GO:0009952 IGI anterior/posterior pattern specification
GO:0043565 IEA sequence-specific DNA binding
GO:0048704 IGI embryonic skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000015333 gbx2-001 protein_coding Danio_rerio 0.0000006 60
ENST00000243103 HOXC12-001 protein_coding Homo_sapiens 0.00000003 66
ENST00000330070 HOXB2-001 protein_coding Homo_sapiens 0.000000000006 77
ENST00000360046 HOXA4-001 protein_coding Homo_sapiens 0 678
ENST00000428284 HOXA4-201 protein_coding Homo_sapiens 0 678
ENST00000511914 HOXA4-004 protein_coding Homo_sapiens 0 603
ENST00000571287 HOXB2-002 processed_transcript Homo_sapiens 0.000000000002 77
ENST00000610970 HOXA4-202 protein_coding Homo_sapiens 0 678

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