C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomyosin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000330188 TPM3-009 ENSG00000143549 9606 - 1:154156364-154183205 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLungENST00000330188
Transcript ID Brain Breast Colon Heart Lung
ENST00000330188 36.107±18.87 18.744±0.00 15.006±0.00 2.446±0.00 28.724±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0003674 ND molecular_function
GO:0003779 IEA actin binding
GO:0005829 TAS cytosol
GO:0005856 TAS cytoskeleton
GO:0005862 TAS muscle thin filament tropomyosin
GO:0006928 TAS cellular component movement
GO:0006936 TAS muscle contraction
GO:0007165 IEA signal transduction
GO:0030049 TAS muscle filament sliding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029549 Tpm3-003 protein_coding Mus_musculus 0 1190
ENSMUST00000072359 Tpm3-rs7-201 protein_coding Mus_musculus 0 1160
ENSMUST00000118566 Tpm3-004 protein_coding Mus_musculus 0 1042
ENSMUST00000119158 Tpm3-005 protein_coding Mus_musculus 0 996
ENSMUST00000062193 Tpm3-201 protein_coding Mus_musculus 0 950
ENSMUST00000119570 Tpm3-001 protein_coding Mus_musculus 0 950
ENSMUST00000121503 Tpm3-002 protein_coding Mus_musculus 0 813
ENSMUST00000131354 Tpm3-006 retained_intron Mus_musculus 0 680
ENSMUST00000147430 Tpm3-011 retained_intron Mus_musculus 0 680
ENSMUST00000149432 Tpm3-007 protein_coding Mus_musculus 0 521
ENSMUST00000149115 Tpm3-009 retained_intron Mus_musculus 0 313
ENSMUST00000151798 Tpm3-012 retained_intron Mus_musculus 0 287
ENSMUST00000133281 Tpm3-010 retained_intron Mus_musculus 0 287
ENSMUST00000133361 Tpm3-013 retained_intron Mus_musculus 0 281
ENSMUST00000127955 Tpm3-008 protein_coding Mus_musculus 0 220
ENSMUST00000143281 Tpm3-015 retained_intron Mus_musculus 0 211
ENSMUST00000149734 Tpm3-014 retained_intron Mus_musculus 1e-35 156

Loading