C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: F-box and WD repeat domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000331272 FBXW4-001 ENSG00000107829 9606 - 10:101610666-101695259 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000331272
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000331272 34.687±0.00 29.336±0.00 0.470±0.00 12.099±10.72 21.125±20.08 34.984±0.00 30.008±0.00 23.698±0.00 5.906±4.75 19.147±18.05 29.147±28.45 10.314±6.86 9.840±5.76 14.318±12.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZR CIL_0007ZR_0001 VISTA 10:101034855-101635629
CIL_00089J CIL_00089J_0001 VISTA 10:101185253-101786853
CIL_000942 CIL_000942_0001 VISTA 10:101206892-101808215
CIL_00099F CIL_00099F_0001 VISTA 10:101467436-102068636
CIL_00099E CIL_00099E_0001 VISTA 10:101480423-102081273
CIL_0005N9 CIL_0005N9_0001 CGP 10:101610664-101780369

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 NAS ubiquitin ligase complex
GO:0002053 IEA positive regulation of mesenchymal cell proliferation
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0006511 NAS ubiquitin-dependent protein catabolic process
GO:0016055 IEA Wnt signaling pathway
GO:0030326 NAS embryonic limb morphogenesis
GO:0042733 IEA embryonic digit morphogenesis
GO:0051216 IEA cartilage development
GO:0060173 IEA limb development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000046869 Fbxw4-001 protein_coding Mus_musculus 0 1596
ENSMUST00000159590 Fbxw4-003 protein_coding Mus_musculus 0 617
ENSMUST00000162433 Fbxw4-007 protein_coding Mus_musculus 0 614
ENSMUST00000162879 Fbxw4-009 protein_coding Mus_musculus 0 553
ENSMUST00000161039 Fbxw4-011 retained_intron Mus_musculus 0 503
ENSMUST00000160438 Fbxw4-008 protein_coding Mus_musculus 0 368
ENSMUST00000160003 Fbxw4-010 protein_coding Mus_musculus 0 316
ENSMUST00000160718 Fbxw4-004 retained_intron Mus_musculus 0 294
ENSMUST00000160018 Fbxw4-006 protein_coding Mus_musculus 0 292
ENSMUST00000161556 Fbxw4-005 retained_intron Mus_musculus 0 252

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