C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: purine-rich element binding protein A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000331327 PURA-001 ENSG00000185129 9606 + 5:140114123-140125619 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastHeartKidneyLiverLungMuscleOvaryPlacentaENST00000331327
Transcript ID Adipose Adrenal Bladder Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000331327 0.910±0.00 0.966±0.00 3.294±0.00 3.514±0.00 0.754±0.00 1.746±0.57 2.183±1.89 3.475±0.00 0.733±0.00 1.708±0.38 1.200±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062Q CIL_00062Q_0002 CGP 5:139846779-140125619

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000784 IC nuclear chromosome, telomeric region
GO:0000900 IEA translation repressor activity, nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003691 IDA double-stranded telomeric DNA binding
GO:0003697 ISS single-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003705 TAS RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005662 ISS DNA replication factor A complex
GO:0005737 IEA cytoplasm
GO:0006268 IDA DNA unwinding involved in DNA replication
GO:0006270 TAS DNA replication initiation
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007399 IEA nervous system development
GO:0008134 ISS transcription factor binding
GO:0008284 IEA positive regulation of cell proliferation
GO:0017148 IEA negative regulation of translation
GO:0030425 IEA dendrite
GO:0032422 IEA purine-rich negative regulatory element binding
GO:0043025 IEA neuronal cell body
GO:0044822 IDA poly(A) RNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0046332 IEA SMAD binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051301 Pura-001 protein_coding Mus_musculus 0 6096
ENSMUST00000179343 Purb-001 protein_coding Mus_musculus 0 521
ENSDART00000081308 purbb-201 protein_coding Danio_rerio 0 363
ENSDART00000099665 purba-001 protein_coding Danio_rerio 0 265
ENSDART00000074984 purg-201 protein_coding Danio_rerio 0 209
ENSDART00000145900 purg-001 protein_coding Danio_rerio 1e-26 128

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