C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAN binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052325 Ranbp1-003 ENSMUSG00000005732 10090 - 16:18239802-18248067 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENSMUST00000052325
Transcript ID Ovary Placenta Testis
ENSMUST00000052325 47.821±24.43 61.289±35.52 3.580±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0007051 IDA spindle organization
GO:0046604 IDA positive regulation of mitotic centrosome separation
GO:0046907 IEA intracellular transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331821 RANBP1-015 protein_coding Homo_sapiens 0 701
ENST00000402752 RANBP1-001 protein_coding Homo_sapiens 0 857
ENST00000411892 RANBP1-012 protein_coding Homo_sapiens 0 529
ENST00000416427 RANBP1-006 protein_coding Homo_sapiens 0 379
ENST00000418705 RANBP1-009 protein_coding Homo_sapiens 0 695
ENST00000421656 RANBP1-007 protein_coding Homo_sapiens 0 377
ENST00000423859 RANBP1-008 protein_coding Homo_sapiens 0 625
ENST00000430524 RANBP1-201 protein_coding Homo_sapiens 0 841
ENST00000432879 RANBP1-004 protein_coding Homo_sapiens 0 335
ENST00000435265 RANBP1-002 nonsense_mediated_decay Homo_sapiens 0 379
ENST00000440419 RP11-164H5.1-001 processed_pseudogene Homo_sapiens 0 377
ENST00000448394 RANBP1-011 processed_transcript Homo_sapiens 0 466
ENST00000486575 RANBP1-003 retained_intron Homo_sapiens 0 254
ENST00000488484 RANBP1-005 retained_intron Homo_sapiens 0 381
ENST00000496795 RP11-298C3.2-001 processed_pseudogene Homo_sapiens 0 649
ENST00000552481 RP11-669B18.1-001 processed_pseudogene Homo_sapiens 0 512

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