C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: legumain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000334869 LGMN-001 ENSG00000100600 9606 - 14:92703809-92748702 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000334869
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000334869 26.328±0.00 42.296±0.00 3.493±0.00 17.463±0.00 75.645±0.00 13.992±0.00 21.849±19.70 50.596±44.75 18.882±13.06 58.910±0.00 9.662±7.41 46.612±2.09 136.375±63.73 28.197±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000536 CIL_000536_0001 CGP 14:92513774-92748702
CIL_000537 CIL_000537_0001 CGP 14:92703807-92839963

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002224 TAS toll-like receptor signaling pathway
GO:0003014 ISS renal system process
GO:0004197 ISS:IEA cysteine-type endopeptidase activity
GO:0005764 ISS lysosome
GO:0006508 ISS:IEA proteolysis
GO:0008202 TAS steroid metabolic process
GO:0008233 IDA peptidase activity
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0032801 ISS receptor catabolic process
GO:0042359 TAS vitamin D metabolic process
GO:0043202 TAS lysosomal lumen
GO:0043524 IGI negative regulation of neuron apoptotic process
GO:0044281 TAS small molecule metabolic process
GO:0045087 TAS innate immune response
GO:0051603 ISS proteolysis involved in cellular protein catabolic process
GO:0070062 IDA extracellular vesicular exosome
GO:1901185 ISS negative regulation of ERBB signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021607 Lgmn-001 protein_coding Mus_musculus 0 1096
ENSMUST00000110020 Lgmn-002 protein_coding Mus_musculus 0 1096
ENSMUST00000146499 Lgmn-003 retained_intron Mus_musculus 0 492

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