C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: legumain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021607 Lgmn-001 ENSMUSG00000021190 10090 - 12:102394098-102439813 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021607
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021607 53.049±4.58 79.751±5.97 26.085±3.53 16.052±1.81 49.655±5.36 52.146±5.99 29.997±5.66 159.398±26.27 27.816±9.69 63.180±5.14 9.039±1.46 153.977±58.09 54.035±24.36 13.831±5.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000536 CIL_000536_0002 CGP 12:102283048-102439813
CIL_000537 CIL_000537_0002 CGP 12:102394084-102497902

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003014 IMP renal system process
GO:0004197 IDA cysteine-type endopeptidase activity
GO:0005764 IDA lysosome
GO:0005770 IDA late endosome
GO:0006508 IDA proteolysis
GO:0008233 IMP peptidase activity
GO:0010447 IMP response to acidic pH
GO:0032801 IMP receptor catabolic process
GO:0040015 IMP negative regulation of multicellular organism growth
GO:0043524 IEA negative regulation of neuron apoptotic process
GO:0045177 IDA apical part of cell
GO:0051603 IMP proteolysis involved in cellular protein catabolic process
GO:0070062 IEA extracellular vesicular exosome
GO:1901185 IMP negative regulation of ERBB signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000334869 LGMN-001 protein_coding Homo_sapiens 0 1096
ENST00000393218 LGMN-005 protein_coding Homo_sapiens 0 1096
ENST00000441282 LGMNP1-001 processed_pseudogene Homo_sapiens 0 896
ENST00000555699 LGMN-004 protein_coding Homo_sapiens 0 965
ENST00000556097 LGMN-019 nonsense_mediated_decay Homo_sapiens 0 237
ENST00000557434 LGMN-002 protein_coding Homo_sapiens 0 965
ENST00000557609 LGMN-007 nonsense_mediated_decay Homo_sapiens 0 752
ENST00000557725 LGMN-022 retained_intron Homo_sapiens 0 490

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