C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: inturned planar cell polarity protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000335251 INTU-003 ENSG00000164066 9606 + 4:127632932-127726737 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaENST00000335251
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENST00000335251 0.060±0.00 0.229±0.00 0.921±0.25 0.380±0.00 0.164±0.00 0.116±0.00 0.218±0.11 0.342±0.00 0.059±0.00 0.202±0.00 0.262±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RF CIL_0008RF_0001 VISTA 4:127185130-127786590
CIL_0007AH CIL_0007AH_0001 CGP 4:127623271-127774299

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 ISS cytoplasm
GO:0007399 ISS nervous system development
GO:0008589 ISS regulation of smoothened signaling pathway
GO:0010839 IEA negative regulation of keratinocyte proliferation
GO:0021513 IEA spinal cord dorsal/ventral patterning
GO:0030216 IEA keratinocyte differentiation
GO:0031069 IEA hair follicle morphogenesis
GO:0042384 ISS cilium assembly
GO:0045880 IEA positive regulation of smoothened signaling pathway
GO:0051782 IEA negative regulation of cell division
GO:0060173 ISS limb development
GO:0060271 IEA cilium morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000091186 Intu-001 protein_coding Mus_musculus 0 2148
ENSMUST00000123495 Haus8-003 nonsense_mediated_decay Mus_musculus 0.00000003 68

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