C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor-like 5 (basic helix-loop-helix)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000335351 TCFL5-001 ENSG00000101190 9606 - 20:62841115-62861763 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000335351
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000335351 6.175±0.00 7.765±2.69 4.902±0.00 2.351±2.18 1.088±0.68 2.284±0.95 1.165±0.09 1.319±0.25 1.614±0.11 7.510±3.50 4.297±2.50 66.340±17.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001O6 CIL_0001O6_0001 CGP 20:62804835-62841159
CIL_0001O1 CIL_0001O1_0001 CGP 20:62816244-62861763
CIL_0001O0 CIL_0001O0_0001 CGP 20:62841115-62937952

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001673 IEA male germ cell nucleus
GO:0003677 IDA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007275 IEA multicellular organismal development
GO:0007283 IEP spermatogenesis
GO:0030154 IEA cell differentiation
GO:0042127 IEP regulation of cell proliferation
GO:0045595 IEP regulation of cell differentiation
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037877 Tcfl5-001 protein_coding Mus_musculus 0 1814
ENSMUST00000131881 Tcfl5-002 retained_intron Mus_musculus 0 979
ENSMUST00000161425 Tcfl5-003 nonsense_mediated_decay Mus_musculus 0 651

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