C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000338700 TRIM2-001 ENSG00000109654 9606 + 4:153204466-153339320 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000338700
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000338700 1.589±0.00 1.883±0.00 4.135±0.00 42.423±10.97 2.626±0.00 6.363±0.45 1.613±0.21 7.541±5.78 1.676±0.00 2.002±0.50 0.299±0.03 6.333±2.32 0.442±0.08 1.922±1.83

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0008219 IEA cell death
GO:0008270 IEA:NAS zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0043523 ISS regulation of neuron apoptotic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054990 Trim2-002 protein_coding Mus_musculus 0 3877
ENSMUST00000065380 Trim2-005 protein_coding Mus_musculus 0 3832
ENSMUST00000107693 Trim2-201 protein_coding Mus_musculus 0 3829
ENSMUST00000107695 Trim2-004 protein_coding Mus_musculus 0 3829
ENSMUST00000107691 Trim2-003 protein_coding Mus_musculus 0 3829
ENSMUST00000107692 Trim2-001 protein_coding Mus_musculus 0 3827
ENSMUST00000128574 Trim2-010 retained_intron Mus_musculus 0 2736
ENSMUST00000137596 Trim2-008 retained_intron Mus_musculus 0 1977
ENSMUST00000122849 Trim2-012 protein_coding Mus_musculus 0 929
ENSMUST00000132283 Trim2-011 protein_coding Mus_musculus 0 902
ENSMUST00000156347 Trim2-016 processed_transcript Mus_musculus 0 719
ENSMUST00000147901 Trim2-014 protein_coding Mus_musculus 0 610
ENSMUST00000136651 Trim2-009 retained_intron Mus_musculus 0 593
ENSDART00000113551 trim2b-001 protein_coding Danio_rerio 0 551
ENSMUST00000154152 Trim2-015 protein_coding Mus_musculus 0 324
ENSMUST00000140856 Trim2-007 retained_intron Mus_musculus 0 316

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