C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine incorporator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000339697 SERINC1-001 ENSG00000111897 9606 - 6:122443354-122471822 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000339697
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000339697 83.572±0.00 51.383±0.00 19.395±0.00 155.770±48.11 67.917±32.33 55.951±33.50 27.593±21.21 52.532±21.47 39.364±1.55 66.457±25.40 39.685±23.64 39.265±8.62 64.480±13.56 43.579±4.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005OP CIL_0005OP_0001 CGP 6:122399546-122471822
CIL_0005OO CIL_0005OO_0001 CGP 6:122443354-122726373

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005789 ISS endoplasmic reticulum membrane
GO:0005886 ISS plasma membrane
GO:0006658 ISS phosphatidylserine metabolic process
GO:0006665 ISS sphingolipid metabolic process
GO:0008654 IEA phospholipid biosynthetic process
GO:0015194 ISS L-serine transmembrane transporter activity
GO:0015825 ISS L-serine transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0051347 ISS positive regulation of transferase activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020027 Serinc1-001 protein_coding Mus_musculus 0 1860
ENSMUST00000169122 Serinc1-003 protein_coding Mus_musculus 0 610
ENSMUST00000164400 Serinc1-005 retained_intron Mus_musculus 0 501
ENSMUST00000170062 Serinc1-004 nonsense_mediated_decay Mus_musculus 0 462
ENSMUST00000166997 Serinc1-002 retained_intron Mus_musculus 0 333
ENSMUST00000167316 Zfp655-202 protein_coding Mus_musculus 0.000004 58

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