C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: C-type lectin domain family 18, member B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000339953 CLEC18B-001 ENSG00000140839 9606 - 16:74408631-74421392 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyOvaryENST00000339953
Transcript ID Bladder Brain Kidney Ovary
ENST00000339953 0.650±0.00 0.009±0.00 0.571±0.00 0.046±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090U CIL_00090U_0001 VISTA 16:73974670-74575347

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0030246 IEA carbohydrate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186384 Clec18a-001 nonsense_mediated_decay Mus_musculus 0 1070
ENSMUST00000188466 Clec18a-003 protein_coding Mus_musculus 0 1070
ENSMUST00000191030 Clec18a-004 nonsense_mediated_decay Mus_musculus 0 1070
ENSMUST00000039597 Clec18a-007 protein_coding Mus_musculus 0 1053
ENSMUST00000191469 Clec18a-005 nonsense_mediated_decay Mus_musculus 0 1053
ENSMUST00000190778 Clec18a-006 nonsense_mediated_decay Mus_musculus 0 1053
ENSMUST00000190222 Clec18a-002 nonsense_mediated_decay Mus_musculus 0 900

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