C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamic pyruvate transaminase (alanine aminotransferase) 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340124 GPT2-001 ENSG00000166123 9606 + 16:46884378-46931297 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000340124
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000340124 15.292±0.00 0.323±0.00 1.863±0.00 12.334±8.64 11.214±9.11 2.546±1.59 1.908±1.57 15.471±5.87 13.245±11.85 0.598±0.00 16.195±0.42 5.905±3.25 2.078±0.15 13.118±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00044Y CIL_00044Y_0002 CGP 16:46796607-46931297
CIL_000451 CIL_000451_0002 CGP 16:46884378-46973788

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004021 IDA L-alanine:2-oxoglutarate aminotransferase activity
GO:0005739 IEA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0006103 IDA 2-oxoglutarate metabolic process
GO:0008652 TAS cellular amino acid biosynthetic process
GO:0009058 IEA biosynthetic process
GO:0030170 IEA pyridoxal phosphate binding
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0042851 IDA L-alanine metabolic process
GO:0042853 IEA L-alanine catabolic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034136 Gpt2-001 protein_coding Mus_musculus 0 1923
ENSMUST00000132932 Gpt2-002 nonsense_mediated_decay Mus_musculus 0 1277
ENSMUST00000140189 Gpt2-004 retained_intron Mus_musculus 0 723
ENSMUST00000143846 Gpt2-005 processed_transcript Mus_musculus 0 638
ENSMUST00000143659 Gpt2-003 processed_transcript Mus_musculus 0 296

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