C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dynein, cytoplasmic 1, intermediate chain 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340296 DYNC1I2-002 ENSG00000077380 9606 + 2:171687409-171748411 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000340296
Transcript ID Adrenal Bladder Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000340296 2.461±0.00 1.779±0.00 2.767±0.00 1.932±0.00 4.147±0.00 1.151±0.00 4.738±0.00 4.633±0.72 12.806±0.20 9.900±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002PU CIL_0002PU_0001 CGP 2:171522247-171748420
CIL_0007RB CIL_0007RB_0001 VISTA 2:171663732-172264836
CIL_0008A7 CIL_0008A7_0001 VISTA 2:171663843-172264792
CIL_0007RB CIL_0007RB_0002 VISTA 2:171664837-172267307
CIL_00062P CIL_00062P_0002 CGP 2:171687409-171999859

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0003777 NAS microtubule motor activity
GO:0005515 IEA protein binding
GO:0005737 NAS cytoplasm
GO:0005813 IDA centrosome
GO:0005829 TAS cytosol
GO:0005868 IEA cytoplasmic dynein complex
GO:0005874 IDA microtubule
GO:0006810 IEA transport
GO:0007018 IEA:NAS microtubule-based movement
GO:0008152 IEA metabolic process
GO:0016032 IEA viral process
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0031982 IDA vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112138 Dync1i2-005 protein_coding Mus_musculus 0 2815
ENSMUST00000081710 Dync1i2-001 protein_coding Mus_musculus 0 2811
ENSMUST00000112139 Dync1i2-006 protein_coding Mus_musculus 0 2795
ENSMUST00000112144 Dync1i2-008 protein_coding Mus_musculus 0 2374
ENSMUST00000112140 Dync1i2-007 protein_coding Mus_musculus 0 2374
ENSMUST00000112142 Dync1i2-003 protein_coding Mus_musculus 0 2374
ENSMUST00000112136 Dync1i2-009 protein_coding Mus_musculus 0 2353
ENSMUST00000100028 Dync1i2-002 protein_coding Mus_musculus 0 2176
ENSMUST00000137683 Dync1i2-010 retained_intron Mus_musculus 0 1812
ENSMUST00000138613 Dync1i2-004 retained_intron Mus_musculus 0 512
ENSMUST00000149735 Dync1i2-011 retained_intron Mus_musculus 0 440
ENSMUST00000141619 Dync1i2-012 processed_transcript Mus_musculus 0 398

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