C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coronin, actin binding protein, 1Ca
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000004217 coro1ca-001 ENSDARG00000035598 7955 + 5:22102847-22203191 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000004217
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000004217 8.265±1.94 13.663±1.15 9.528±1.19 2.172±0.00 4.350±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0015629 IEA actin cytoskeleton
GO:0030036 IEA actin cytoskeleton organization
GO:0051015 IEA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004646 Coro1c-001 protein_coding Mus_musculus 0 749
ENSMUST00000163264 Coro1c-004 protein_coding Mus_musculus 6.00036e-42 174
ENSMUST00000164980 Coro1c-002 nonsense_mediated_decay Mus_musculus 0 279
ENSMUST00000168399 Coro1c-005 protein_coding Mus_musculus 4e-28 128
ENSMUST00000171630 Coro1c-003 retained_intron Mus_musculus 3e-25 122
ENST00000341356 CORO1B-001 protein_coding Homo_sapiens 0 660
ENST00000393893 CORO1B-201 protein_coding Homo_sapiens 0 660
ENST00000453768 CORO1B-003 retained_intron Homo_sapiens 0 412
ENST00000537042 CORO1B-004 nonsense_mediated_decay Homo_sapiens 0 412
ENST00000545016 CORO1B-008 protein_coding Homo_sapiens 0 276
ENST00000545736 CORO1B-002 retained_intron Homo_sapiens 0 292
ENST00000616321 CORO1B-009 nonsense_mediated_decay Homo_sapiens 0 412

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