C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XI, alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341947 COL11A2-201 ENSG00000204248 9606 - 6:33162692-33192468 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverLungOvaryENST00000341947
Transcript ID Liver Lung Ovary
ENST00000341947 0.128±0.00 0.367±0.00 0.403±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PH CIL_0001PH_0002 CGP 6:33162681-33200688

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0005201 IEA extracellular matrix structural constituent
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005592 NAS collagen type XI trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007605 IMP sensory perception of sound
GO:0022617 TAS extracellular matrix disassembly
GO:0030020 NAS extracellular matrix structural constituent conferring tensile strength
GO:0030198 TAS extracellular matrix organization
GO:0030199 IDA collagen fibril organization
GO:0030574 TAS collagen catabolic process
GO:0030674 NAS protein binding, bridging
GO:0046872 IEA metal ion binding
GO:0051216 IMP cartilage development
GO:0060021 IMP palate development
GO:0060023 IMP soft palate development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114255 Col11a2-202 protein_coding Mus_musculus 0 5413
ENSMUST00000114252 Col11a2-201 protein_coding Mus_musculus 0 5151
ENSMUST00000087497 Col11a2-001 protein_coding Mus_musculus 0 5151
ENSMUST00000143354 Col11a2-003 protein_coding Mus_musculus 0 2952
ENSMUST00000131134 Col11a2-002 protein_coding Mus_musculus 0 2209
ENSMUST00000144927 Col11a2-006 retained_intron Mus_musculus 0 965
ENSMUST00000173749 Col11a2-007 processed_transcript Mus_musculus 0 531
ENSMUST00000137374 Col11a2-005 retained_intron Mus_musculus 0 267

Loading