C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341998 SLC24A2-001 ENSG00000155886 9606 - 9:19507452-19786928 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartLiverLungMuscleOvaryPlacentaENST00000341998
Transcript ID Bladder Brain Heart Liver Lung Muscle Ovary Placenta
ENST00000341998 0.039±0.00 9.876±4.58 0.010±0.00 0.001±0.00 0.007±0.00 0.007±0.00 0.013±0.00 0.016±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DB CIL_0007DB_0001 CGP 9:19409059-19786928
CIL_0007D2 CIL_0007D2_0001 CGP 9:19507452-20622543

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005262 IEA calcium channel activity
GO:0005509 IEA calcium ion binding
GO:0005886 TAS plasma membrane
GO:0006811 TAS ion transport
GO:0006813 IEA potassium ion transport
GO:0006816 IEA calcium ion transport
GO:0006874 IEA cellular calcium ion homeostasis
GO:0007601 IEA visual perception
GO:0007612 IEA learning
GO:0007613 IEA memory
GO:0008273 IDA calcium, potassium:sodium antiporter activity
GO:0015293 IEA symporter activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016151 IEA nickel cation binding
GO:0030145 IEA manganese ion binding
GO:0030955 IEA potassium ion binding
GO:0031226 IEA intrinsic component of plasma membrane
GO:0031402 IEA sodium ion binding
GO:0034220 IDA ion transmembrane transport
GO:0035725 IDA sodium ion transmembrane transport
GO:0046870 IEA cadmium ion binding
GO:0046983 IEA protein dimerization activity
GO:0055085 TAS:IEA transmembrane transport
GO:0060291 IEA long-term synaptic potentiation
GO:0060292 IEA long term synaptic depression
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107157 Slc24a2-001 protein_coding Mus_musculus 0 2724
ENSMUST00000044990 Slc24a2-005 protein_coding Mus_musculus 0 2543
ENSMUST00000107158 Slc24a2-201 protein_coding Mus_musculus 0 1352
ENSMUST00000107155 Slc24a2-006 protein_coding Mus_musculus 0 1286
ENSMUST00000134248 Slc24a2-003 processed_transcript Mus_musculus 0 1103
ENSMUST00000155361 Slc24a2-002 processed_transcript Mus_musculus 0 1103
ENSMUST00000134643 Slc24a2-004 processed_transcript Mus_musculus 0 1101
ENSMUST00000146815 Slc24a2-007 protein_coding Mus_musculus 0 507
ENSMUST00000140780 Slc24a2-008 processed_transcript Mus_musculus 0 383

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